Solution

Gene Family Database

Gene Family Database is an integrated pipeline for identifying
gene families (20 times efficient with previous systesm)
Gene Family Database
  • Pipeline for identifying gene families Automated pipeline provides efficient and precise identification of gene family identification with three majormethods (functional domains, patterns, similarity)
  • Pipeline for comparing gene families It compares gene families in the aspects of phylogenetics and domains.
  • Planform for establishing gene family database Platform provides easy establishment of web interfaces for presenting analysis results
    and for conducting analysis on the web, resulting that 19 gene family databases are available.
Pipeline structure of Gene Family Database

Genome
Archive®

Gene Family Identication Pipeline

InterPro domains

Patterns (HMMER)

Simlarity (BLAST)

Classifier Engine

Cytochrome P450s
PKS
Neuropeptide
HOX

GATA Transcription factors
NAC Transcription factors
MADSBox Transcription factors
AP2 Transcription factors

Annotation
Database

Phylogenetic
analyses

Domain analtses

Group analyses

Comparative
Analyses

Web Interfaces

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Current version :1.0.1 (Lastupdate : 2019-11-04 12:44:54)